Blacktron Future Generation13,26, a criminal organization
Insectoid Hivefleet13, the space navy of the insectoids
Futuron13, civilian organisation in space, using the logo of "classic space"
Brick Kickers17, a soccer team
Clown University23,
Aztec Empire27, as well as the Eagle Knights27.
Galaxy Patrol28, presumably part of the Futuron based on their logo, perhaps with ties to the ADU based on their ties to the Pluuvian Brain-Beast.
Alien Defence Unit29, presumably a part of Futuron.
Lego Studios34,35,
the Forestmen37,38,39, rebels (?) or bandits in Greenwood
Crown Knights40, possibly the origin of the CMF Heroic Knight.
LEGO City Police Force42,
Roman Empire43, ancient empire
Stackers44, a baseball team with an "S" logo
Blacktron47, space raiders
Indigo Islanders50, native people of the Indigo islands
Hunnic Empire56,
Papa Brickolini's Pizzeria57,
Monster Circus66, a sort of reverse circus showing regular professions.
The Old Times67, a newspaper
The Zombie Times68, a newspaper
Zombie University69,
the Wolfpack
Boar Clan77,
The Gladiator School78,
The LEGO NEWS80, a news paper in Lego City
The Highlander80, a biljard hall in Lego City. it is in league with the candy smugglers.
Ace Brickman Private Detective80, a private investigator firm in Lego City
Al's80, A barbershop in Lego City
Brick Bank81, a bank in Lego City.
Soap 'n' Suds81, a laundromat in Lego City, used by the mob to laundy money
the Daily Blabber81, a newspaper in Lego City. It mentions a tree coming to life.
Newbury High and Newbury Middle83, a high and middle school in Newbury
The Hidden Side83, a place of ghosts?
Shrip Diner83,
Implied
M-team Cheerleading Squad1
A-team Cheerleading Squad33, possibly rival of M-team
Lego City Circus2
"Wave Swimwear"3,4,5, high quality swimwear
Tribal Hunter's Tribe6
Tribal Cheif's Tribe7
Lego City University8,21,
Lego City Police Traffic department9,
"Flying Wrench"11,12, maybe a racing team with a logo of a flying wrench
Lego City Tennis Club14,30,
Lego City CBRN Defence Agency15,
"Lego City Wolves"16, an ice-hockey team
"2x2 sportswear"16,17, a clothes manufacturer with a logo of a 2x2 brick
Lego City Gym19,
Lego City Mafia20,
The Royal Guard22, presumably the guard of the LEGO English royalty
LEGO City Zoo24,
LEGO City Butcher Shop25,
Hypaxxian Empire26, aka the empire of the alien villainess or the alien invaders of alien conquest
Crown Intelligence31, presumably an MI6-like organisation
Football League32, possibly on the same team as M-team Cheerleading Squad
Alien Avengers 36, tough space warriors assembled from all across the galaxy. the particular minifig is one of 5000 identical siblings. Possibly for hire?
Lego City Judicial System41,
League of Baseball44,
Lego City Library45,
Lego Town Police Force (JFC)46, a smaller, more english style of police force, possibly outside of the larger lego city? Serves "the queen".
Santa's Workshop48,49, although not located on the north pole
Mountain Rescue51, star of life in a white mountain
Nobrick Prize Comitee52,
Dino Defence53,54,55, elite team of dinosaur hunters. Tranquilizes dinos and moves them to a dino nature reserve
Futuron Mining Industries58, based on the space miner's classic space logo.
Toflacrevian Armada59, the woefully ancient star fleet of the toflacrevians
Pharaoh's Standing Army60,
Lego City Fencing Club61,
Galaxy Squad Trooper62, front line of defense for the universe’s peaceful planets and outposts under juristiction of the Galaxy Squad